Recent changes for /fac/sci/lifesci/research/thermophyl/ /fac/sci/lifesci/research/thermophyl/ Contents of /fac/sci/lifesci/research/thermophyl/ en-GB (C) 2026 91影视破解版 Fri, 13 Oct 2023 14:29:24 GMT http://blogs.law.harvard.edu/tech/rss SiteBuilder2, 91影视破解版, http://go.warwick.ac.uk/sitebuilder Tools to manage pyrosequencing data /fac/sci/lifesci/research/thermophyl/pipeline/ <p>Last updated: 15:29, Fri 13 Oct 2023 by Sheila Bevan</p><p><a href="/sitebuilder2/render/compareVersions.htm?sbrPage=/fac/sci/lifesci/research/thermophyl/pipeline&amp;version=LATEST&amp;external=true">Compare with previous version</a></p> Fri, 13 Oct 2023 14:29:24 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/ Download /fac/sci/lifesci/research/thermophyl/download/ <p>Last updated: 15:21, Fri 13 Oct 2023 by Sheila Bevan</p><p><a href="/sitebuilder2/render/compareVersions.htm?sbrPage=/fac/sci/lifesci/research/thermophyl/download&amp;version=LATEST&amp;external=true">Compare with previous 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version</a></p> Fri, 13 Oct 2023 11:57:03 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/ shell_script_example_16s.sh /fac/sci/lifesci/research/thermophyl/pipeline/shell_script_example_16s.sh <p>Last updated: 08:39, Fri 27 Apr 2012 by Kevin Purdy</p> Fri, 27 Apr 2012 07:39:50 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/shell_script_example_16s.sh split_fas_by_txt.pl /fac/sci/lifesci/research/thermophyl/pipeline/split_fas_by_txt.pl <p>Last updated: 08:39, Fri 27 Apr 2012 by Kevin Purdy</p> Fri, 27 Apr 2012 07:39:50 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/split_fas_by_txt.pl split_fasta_file_into_batches.pl /fac/sci/lifesci/research/thermophyl/pipeline/split_fasta_file_into_batches.pl <p>Last updated: 08:39, Fri 27 Apr 2012 by Kevin Purdy</p> Fri, 27 Apr 2012 07:39:50 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/split_fasta_file_into_batches.pl strip_gaps.pl /fac/sci/lifesci/research/thermophyl/pipeline/strip_gaps.pl <p>Last updated: 08:39, Fri 27 Apr 2012 by Kevin Purdy</p> Fri, 27 Apr 2012 07:39:50 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/strip_gaps.pl translate_3_or_6_frames.pl /fac/sci/lifesci/research/thermophyl/pipeline/translate_3_or_6_frames.pl <p>Last updated: 08:39, Fri 27 Apr 2012 by Kevin Purdy</p> Fri, 27 Apr 2012 07:39:50 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/translate_3_or_6_frames.pl trim_trailing_xs.pl /fac/sci/lifesci/research/thermophyl/pipeline/trim_trailing_xs.pl <p>Last updated: 08:39, Fri 27 Apr 2012 by Kevin Purdy</p> Fri, 27 Apr 2012 07:39:50 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/trim_trailing_xs.pl rename_seqs_by_pattern_matching.pl /fac/sci/lifesci/research/thermophyl/pipeline/rename_seqs_by_pattern_matching.pl <p>Last updated: 08:39, Fri 27 Apr 2012 by Kevin Purdy</p> Fri, 27 Apr 2012 07:39:50 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/rename_seqs_by_pattern_matching.pl rev_com.pl /fac/sci/lifesci/research/thermophyl/pipeline/rev_com.pl <p>Last updated: 08:39, Fri 27 Apr 2012 by Kevin Purdy</p> Fri, 27 Apr 2012 07:39:50 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/rev_com.pl length_summary_and_trimming.pl /fac/sci/lifesci/research/thermophyl/pipeline/length_summary_and_trimming.pl <p>Last updated: 08:39, Fri 27 Apr 2012 by Kevin Purdy</p> Fri, 27 Apr 2012 07:39:50 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/length_summary_and_trimming.pl arb_format_conversion_v2.pl /fac/sci/lifesci/research/thermophyl/pipeline/arb_format_conversion_v2.pl <p>Last updated: 08:39, Fri 27 Apr 2012 by Kevin Purdy</p> Fri, 27 Apr 2012 07:39:50 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/arb_format_conversion_v2.pl remove_redundant_seqs_from_fasta_file.pl /fac/sci/lifesci/research/thermophyl/pipeline/remove_redundant_seqs_from_fasta_file.pl <p>Last updated: 08:39, Fri 27 Apr 2012 by Kevin Purdy</p> Fri, 27 Apr 2012 07:39:50 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/remove_redundant_seqs_from_fasta_file.pl primer_screen_and_barcode_trimming.pl /fac/sci/lifesci/research/thermophyl/pipeline/primer_screen_and_barcode_trimming.pl <p>Last updated: 08:39, Fri 27 Apr 2012 by Kevin Purdy</p> Fri, 27 Apr 2012 07:39:50 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/primer_screen_and_barcode_trimming.pl Pyrosequence Analysis scripts (Zip file) /fac/sci/lifesci/research/thermophyl/pipeline/brian_scripts.zip <p>Last updated: 08:38, Fri 27 Apr 2012 by Kevin Purdy</p> Fri, 27 Apr 2012 07:38:55 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/brian_scripts.zip ThermoPhyl User Guide /fac/sci/lifesci/research/thermophyl/thermophyl_manual.pdf <p>Last updated: 09:46, Mon 14 Nov 2011 by Kevin Purdy</p> Mon, 14 Nov 2011 09:46:17 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/thermophyl_manual.pdf Video 3: Automated graphics and analysis part II /fac/sci/lifesci/research/thermophyl/pipeline/video4_2nd_cut.flv <p>Last updated: 13:08, Mon 14 Dec 2009 by </p> Mon, 14 Dec 2009 13:08:22 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/video4_2nd_cut.flv Video 4: Integration with mothur /fac/sci/lifesci/research/thermophyl/pipeline/complete_mothur_video1.flv <p>Last updated: 13:07, Mon 14 Dec 2009 by </p> Mon, 14 Dec 2009 13:07:49 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/complete_mothur_video1.flv Video 2: High-throughput clustering and automated analysis part I /fac/sci/lifesci/research/thermophyl/pipeline/nov_30_fasta_to_rarefaction6.flv <p>Last updated: 09:32, Thu 3 Dec 2009 by </p> Thu, 03 Dec 2009 09:32:58 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/nov_30_fasta_to_rarefaction6.flv Video: Bin sequences into clusters, generate rarefaction curves /fac/sci/lifesci/research/thermophyl/pipeline/nov_30_fasta_to_rarefaction4.flv <p>Last updated: 20:43, Mon 30 Nov 2009 by </p> Mon, 30 Nov 2009 20:43:19 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/nov_30_fasta_to_rarefaction4.flv Video 1: Initial screening and quality control /fac/sci/lifesci/research/thermophyl/pipeline/screening_and_qc.flv <p>Last updated: 14:44, Mon 30 Nov 2009 by </p> Mon, 30 Nov 2009 14:44:00 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/pipeline/screening_and_qc.flv thermophyl_v1.4_linux.pl /fac/sci/lifesci/research/thermophyl/linux/thermophyl_v1.4_linux.pl <p>Last updated: 22:15, Tue 7 Jul 2009 by </p> Tue, 07 Jul 2009 21:15:45 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/linux/thermophyl_v1.4_linux.pl thermophyl_v1.4.pl /fac/sci/lifesci/research/thermophyl/linux/thermophyl_v1.4.pl <p>Last updated: 22:11, Tue 7 Jul 2009 by </p> Tue, 07 Jul 2009 21:11:45 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/linux/thermophyl_v1.4.pl thermophyl_v1.4.pl /fac/sci/lifesci/research/thermophyl/thermophyl_v1.4.pl <p>Last updated: 22:09, Tue 7 Jul 2009 by </p> Tue, 07 Jul 2009 21:09:26 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/thermophyl_v1.4.pl thermophyl_v1.3a.pl /fac/sci/lifesci/research/thermophyl/linux/thermophyl_v1.3a.pl <p>Last updated: 12:47, Tue 16 Jun 2009 by </p> Tue, 16 Jun 2009 11:47:15 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/linux/thermophyl_v1.3a.pl cartoon_tree_for_web.gif /fac/sci/lifesci/research/thermophyl/manual/cartoon_tree_for_web.gif <p>Last updated: 16:09, Fri 8 May 2009 by </p> Fri, 08 May 2009 15:09:33 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/manual/cartoon_tree_for_web.gif cartoon_tree_for_web.png /fac/sci/lifesci/research/thermophyl/manual/cartoon_tree_for_web.png <p>Last updated: 16:00, Fri 8 May 2009 by </p> Fri, 08 May 2009 15:00:16 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/manual/cartoon_tree_for_web.png mcr_tree_for_web.gif /fac/sci/lifesci/research/thermophyl/validation/mcr_tree_for_web.gif <p>Last updated: 15:41, Fri 8 May 2009 by </p> Fri, 08 May 2009 14:41:54 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/validation/mcr_tree_for_web.gif mcr_tree /fac/sci/lifesci/research/thermophyl/validation/mcr_tree_for_web.png <p>Last updated: 15:36, Fri 8 May 2009 by </p> Fri, 08 May 2009 14:36:40 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/validation/mcr_tree_for_web.png thermophyl_v1.3a.pl /fac/sci/lifesci/research/thermophyl/thermophyl_v1.3a.pl <p>Last updated: 22:08, Mon 4 May 2009 by </p> Mon, 04 May 2009 21:08:37 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/thermophyl_v1.3a.pl validation_html_m23f7fc83.png /fac/sci/lifesci/research/thermophyl/validation/validation_html_m23f7fc83.png <p>Last updated: 21:14, Mon 4 May 2009 by </p> Mon, 04 May 2009 20:14:43 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/validation/validation_html_m23f7fc83.png faq_html_m7d8fc955.png /fac/sci/lifesci/research/thermophyl/faq/faq_html_m7d8fc955.png <p>Last updated: 20:46, Mon 4 May 2009 by </p> Mon, 04 May 2009 19:46:45 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/faq/faq_html_m7d8fc955.png manual_html_m11d4747b.gif /fac/sci/lifesci/research/thermophyl/manual/manual_html_m11d4747b.gif <p>Last updated: 13:26, Mon 4 May 2009 by </p> Mon, 04 May 2009 12:26:36 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/manual/manual_html_m11d4747b.gif test.tif /fac/sci/lifesci/research/thermophyl/test.tif <p>Last updated: 13:26, Wed 22 Apr 2009 by </p> Wed, 22 Apr 2009 12:26:31 GMT Kevin Purdy /fac/sci/lifesci/research/thermophyl/test.tif